Installation
Installation
genomepy requires Python 3.9+
You can install genomepy via bioconda, pip or git.
Bioconda
$ conda install -c conda-forge -c bioconda 'genomepy>=0.16'
Pip
$ pip install genomepy
With the Pip installation, you will have to install additional dependencies, and make them available in your PATH.
To read/write bgzipped genomes you will have to install pysam
.
If you want to use gene annotation features, you will have to install the following utilities:
genePredToBed
genePredToGtf
bedToGenePred
gtfToGenePred
gff3ToGenePred
You can find the binaries here.
Git
```bash $ git clone https://github.com/vanheeringen-lab/genomepy.git $ conda env create -n genomepy -f genomepy/environment.yml $ conda activate genomepy