genomepy.plugins

Plugin class, modules & related functions

Functions

activate(name)	Activate plugin.
convert(name)	Convert CamelCase to underscore.
deactivate(name)	Deactivate plugin.
get_active_plugins()	Returns all active plugin instances.
init_plugins()	create a dictionary of plugin instances
list_plugins()
manage_plugins(command[, plugin_names])	Manage genomepy plugins
show_plugins()

Classes

Plugin()

Plugin base class.

Modules

genomepy.plugins.blacklist
genomepy.plugins.bowtie2
genomepy.plugins.bwa
genomepy.plugins.gmap
genomepy.plugins.hisat2
genomepy.plugins.minimap2
genomepy.plugins.star