genomepy.providers

Provider class, modules & related functions

Functions

create(name)	Create a provider based on the provider name.
list_online_providers()	List of providers genomepy supports that are online right now.
list_providers()	List of providers genomepy supports
map_locations(frm, to[, genomes_dir])	Load chromosome mapping from one assembly to another using the NCBI assembly reports.
online_providers([provider])	Check if the provider can be reached, or any provider if none is specified.
search(term[, provider, exact, size])	Search for term in genome names and descriptions (if term contains text.

Classes

Provider()

Find & instantiate providers

Modules

genomepy.providers.base	BaseProvider class, the parent of the provider classes
genomepy.providers.ensembl
genomepy.providers.gencode
genomepy.providers.local
genomepy.providers.ncbi
genomepy.providers.ucsc
genomepy.providers.url