genomepy.config.Config

class genomepy.config.Config

Bases: MutableMapping

Configuration class.

State will be shared across config objects.

__init__()

Create a Config object and read a config file.

Methods

__init__()	Create a Config object and read a config file.
clear()
get(k[,d])
items()
keys()
load([path])	Load yaml-formatted config file.
pop(k[,d])	If key is not found, d is returned if given, otherwise KeyError is raised.
popitem()	as a 2-tuple; but raise KeyError if D is empty.
save([path])	Save current state of config dictionary.
setdefault(k[,d])
update([E, ]**F)	If E present and has a .keys() method, does: for k in E.keys(): D[k] = E[k] If E present and lacks .keys() method, does: for (k, v) in E: D[k] = v In either case, this is followed by: for k, v in F.items(): D[k] = v
values()

Attributes

config_dir
config_file
default_config_file

clear() → None.  Remove all items from D.

get(k[, d]) → D[k] if k in D, else d.  d defaults to None.

items() → a set-like object providing a view on D's items

keys() → a set-like object providing a view on D's keys

load(path=None)

Load yaml-formatted config file.

Parameters

path (str | None) – path to config file

pop(k[, d]) → v, remove specified key and return the corresponding value.

If key is not found, d is returned if given, otherwise KeyError is raised.

popitem() → (k, v), remove and return some (key, value) pair

as a 2-tuple; but raise KeyError if D is empty.

save(path=None)

Save current state of config dictionary.

Parameters

path (str | None) – path to config file

setdefault(k[, d]) → D.get(k,d), also set D[k]=d if k not in D

update([E, ]**F) → None.  Update D from mapping/iterable E and F.

If E present and has a .keys() method, does: for k in E.keys(): D[k] = E[k] If E present and lacks .keys() method, does: for (k, v) in E: D[k] = v In either case, this is followed by: for k, v in F.items(): D[k] = v

values() → an object providing a view on D's values