genomepy.genome.sequences

Functions to extract or convert genomic sequences

Functions

bad_coords(region, track)
bed_to_seq(self, vals[, stranded, ...])
bed_to_seqs(self, track[, stranded, ...])
get_random_sequences(self[, n, length, ...])	Return random genomic sequences.
get_track_type(track)
region_to_seq(self, region[, extend_up, ...])
regions_to_seqs(self, track[, extend_up, ...])
track2fasta(self, track[, fastafile, ...])	Return a list of fasta sequences as Sequence objects as directed from the track(s).
weighted_selection(list_of_tuples, n)	Selects n random elements from a list of (weight, item) tuples.